Your [very obvious] answer to your issue is within your first sentence. You love the pickup split to the P90 coil, and don't like the pickup in series.
That doesn't sound like a "problem" to me. It just sounds like you have an opinion on what you like most and least about the pickup. So...use the P90 coil, and don't use the coils in series. Just because it's there doesn't mean you have to make use of it.
With my P-Rails, I use a pair of the lowest output models, in both the neck and bridge positions. I have the neck one set to switch between P90 or rail. I have the bridge one set to switch between P90 and series. I use them as P90s as the "normal" setting. Therefore switches I have operate as a thickness cut for the neck pickup, and a thickness boost for the bridge pickup. Series with the neck pickup is useless to me as well, so I didn't even provide for it in my wiring scheme. I also don't like the parallel orientation on either pickup, therefore I don't have it wired in as an option either. I still love the pickups. I use what I like on them, and ignore what I don't like. The P90 coil alone is the best sounding P90 tone in humbucker form that I've ever used, and that alone makes the P-Rails worth buying. Anything else they provide beyond an excellent P90 tone is just icing on the cake.