Honestly, it does sound odd to discern the differences between a magnet in a pickup, and the same magnet material, just with tiny bumps, LOL.
But I do love my CS JB with the RC magnet. *raises pinky*
I won't pollute your thread with boring thoughts on RC vs smooth and the differences that it implies but if we
just talk about changing magnets...
When testing bars of a "same" alloy with a Teslameter / Gaussmeter, results can be extremely random. In some cases, measured values are similar if not identical. In other comparisons, there will be clear differences, with an A5 1,4 less charged than the next one for instance (as noticed here with one of the vintage blueish Duncan magnets mentioned above by eclecticsynergy)...
And that kind of change certainly makes perceptible tonal nuances with a pickup at the same height under the strings... as admitted even by theoricians swearing by bode plots : Zollner explains that AlNiCo alloys make "no difference" by themselves and that only magnetic flux count (I won't discuss that here)... But he also counts 8 kinds of A5, shows 8 different BH curves to characterize 8 A5 bars and writes (I quote him) : "Obviously, a “typical” Alnico 5 material does not exist"...
That's why I've repeatitively shared here the idea that A5 or other AlNiCo alloys from different eras and foundries might differ sonically...
... and that's why, for years, I've a simple approach with mag swapping: I ignore alloys / data and change magnets until my ears are satisfied, regardless of the tech measurements that I always do nevertheless.
Mileages may vary. What counts is having fun with music whatever is the road to this, anyway... ;-)