So, this thing needs a serious setup. The saddles were real low, which is the same as the pups too high. I lowered them down to only a millimeter or two above the pickguard and the tone improved immensely. Tomorrow, I'll do a complete proper setup, and then go from there. These pups definitely have the potential to sound great.
I don't know why I didn't do a proper setup to begin with. Lazy, or impatient, I suppose.
P.S. I need to rewire the tones for N/M and B. The bridge needs some high end taming.