The 59 was designed to original PAF specs and look, and thus, doesn't have the logo. It can be ordered with one, however. I believe that bridge or trembuckers do have the logo.
at UGD, evan explained that they'll basically make just about any pickup with or without the logo at the customers request (this includes guitar manufacturers who use SDs as OEM pups) ... the only matter will be how long one has to wait for the pup to wind its way along the factory floor if they arent making that pickup that way at the moment