Could this be why it sounds so dark compared to the JB junior in my previous strat?
1-SC sized humbuckers don't "comb filter" notes like full sized ones. Go there and enter "0.65" then "1.5" in the "width" box to see what I mean:
2-The sound of passive humbuckers is
far to be defined only by the resistive load of pots. Among other factors, inductance of the pickup and capacitive load of wiring are to take in account, as well as the input impedance of the first "host" receiving the signal of the pickup. Which brings simple questions: what is your rig - amp, cab(s),
cables and their length, pedals or not?
The page below explains a few basic things about passive pickups. Scroll down to fig. 14 to see what pot resistance does to the resonance of your pickup and to fig. 15 to see what the capacitance of your wiring + cable(s) does with not less effects on the tone.
3-If one wants to increase the resistive load, changing a 250k tone control in a no-load pot is a cheaper solution than changing pots, for the record. Recipe there:
In this guide we demonstrate how to modify a standard log (audio) taper pot to make it function as a blender pot (similar to a no load pot). Blender pots are most commonly used in the popular Strat blend wiring mod which replaces the second tone control on a typical Strat with a blend control -...
sixstringsupplies.co.uk
4-I've no horses in the race (no JB nor Shawbucker in any of my guitars right now) but questions in my point 2 seem relevant if we consider that you perceive as "muffled" a pickup (the JB) used on famous tracks that I don't exacly hear in the same way:
By Jay Hale The Seymour Duncan JB humbucker is beyond iconic in the rock world. Its tone is so distinctive, so inherently familiar and pleasing it’s almost what you expect to hear on a rock recording. Since its introduction in the 70s it has appeared on so many recordings you probably don’t...
www.seymourduncan.com
Reason why my points 1, 2 and 3 are meant to help you to explain and to solve what you notice... FWIW.